@echo off
@cls

@rem
@rem  BATCH FILE FOR UPDATING WEB ANNOTATIONS EXTRACTED WITH MyWEST 
@rem  (Andrea Stella, MS and Marco Masseroli, PhD)
@rem

@for %%I in (1,2,3,4,5,6,7) do echo.
@echo                   MyWEST-Up: My Web Extraction Software Tool
@echo                            Mined Annotation Updating
@echo.
@echo                  (Andrea Stella, MS and Marco Masseroli, PhD)
@echo.
@echo.
@echo                    http://www.medinfopoli.polimi.it/MyWEST/
@echo.
@echo.
@echo.
@echo.
@echo.
@echo    Performing web extractions, please wait ...

@rem
@rem  Configure the below command line: 
@rem  	@javaw -jar MyWEST-Up.jar TEMPLATE_LIST CODE_LIST gap=GAP output=SAVING_TYPE 
@rem  by assigning a value to the TEMPLATE_LIST, CODE_LIST, GAP, and SAVING_TYPE parameters 
@rem  (e.g. @javaw -jar MyWEST-Up.jar updating/Templates.txt datafiles/Codes.txt gap=15000 output=xls+db) 
@rem  according to the following:
@rem
@rem  TEMPLATE_LIST: name, with extension and relative path from the main MyWEST 
@rem  directory, of the text file containing the list of templates to use for the 
@rem  extraction (e.g. updating/Templates.txt)
@rem 
@rem  CODE_LIST: name, with extension and relative path from the main MyWEST 
@rem  directory, of the text file containing the list of nucleotide or aminoacidic 
@rem  sequence codes to extract annotation for (e.g. updating/Codes.txt)
@rem
@rem  GAP: interval in milliseconds between the data extractions of two subsequent 
@rem  sequence identification codes in code the list. 
@rem  For long sequence identification code lists it is useful to set this value 
@rem  to 15000, at least, to avoid loading a databank web server with many concentrated
@rem  requests. In many case this can lead to the permanent cutting of the connection 
@rem  to the web sever for the used computer IP.
@rem  
@rem  SAVING_TYPE: output saving format of the extracted data. 
@rem  	xls: 	saving in excel text files; 
@rem  	db: 	saving in a relational database; 
@rem  	xls+db: saving both in excel text files and in a relational database.
@rem  

@javaw -jar MyWEST-Up.jar updating/Templates.txt updating/Codes.txt gap=15000 output=xls+db 

@rem cls
@echo.
@echo    Extractions completed!
@echo.
@echo.
@pause